Package: NGLVieweR 1.4.0

NGLVieweR: Interactive 3D Visualization of Molecular Structures

Provides an 'htmlwidgets' <https://www.htmlwidgets.org/> interface to 'NGL.js' <http://nglviewer.org/ngl/api/>. 'NGLvieweR' can be used to visualize and interact with protein databank ('PDB') and structural files in R and Shiny applications. It includes a set of API functions to manipulate the viewer after creation in Shiny.

Authors:Niels van der Velden [aut, cre], Alexander Rose [cph]

NGLVieweR_1.4.0.tar.gz
NGLVieweR_1.4.0.zip(r-4.5)NGLVieweR_1.4.0.zip(r-4.4)NGLVieweR_1.4.0.zip(r-4.3)
NGLVieweR_1.4.0.tgz(r-4.4-any)NGLVieweR_1.4.0.tgz(r-4.3-any)
NGLVieweR_1.4.0.tar.gz(r-4.5-noble)NGLVieweR_1.4.0.tar.gz(r-4.4-noble)
NGLVieweR_1.4.0.tgz(r-4.4-emscripten)NGLVieweR_1.4.0.tgz(r-4.3-emscripten)
NGLVieweR.pdf |NGLVieweR.html✨
NGLVieweR/json (API)
NEWS

# Install 'NGLVieweR' in R:

install.packages('NGLVieweR', repos = c('https://nvelden.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nvelden/nglviewer/issues

On CRAN:

ngl nglviewer pdb protein-data-bank shiny shiny-applications

7.06 score 45 stars 1 packages 57 scripts 244 downloads 33 exports 38 dependencies

Last updated 2 hours agofrom:442f5f1898. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-win	OK	Nov 22 2024
R-4.5-linux	OK	Nov 22 2024
R-4.4-win	OK	Nov 22 2024
R-4.4-mac	OK	Nov 22 2024
R-4.3-win	OK	Nov 22 2024
R-4.3-mac	OK	Nov 22 2024

Exports:%>%addRepresentation addSelection addStructure file_ext NGLVieweR NGLVieweR_example NGLVieweR_proxy NGLVieweROutput removeSelection renderNGLVieweR selectionParameters setFocus setPosition setQuality setRock setRotation setScale setSpin setSuperpose snapShot stageParameters updateColor updateFocus updateFullscreen updateRepresentation updateRock updateSelection updateSpin updateStage updateVisibility updateZoomMove zoomMove

Dependencies:base64enc bslib cachem cli commonmark crayon digest evaluate fastmap fontawesome fs glue highr htmltools htmlwidgets httpuv jquerylib jsonlite knitr later lifecycle magrittr memoise mime promises R6 rappdirs Rcpp rlang rmarkdown sass shiny sourcetools tinytex withr xfun xtable yaml

NGLVieweR

Rendered fromNGLVieweR.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2024-11-20
Started: 2021-02-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add representation	addRepresentation
Add a selection	addSelection
Add structure	addStructure
Create a NGLVieweR	NGLVieweR
Run NGLVieweR example Shiny app	NGLVieweR_example
Shiny bindings for NGLVieweR	NGLVieweR-shiny NGLVieweROutput NGLVieweR_proxy renderNGLVieweR
Remove a selection	removeSelection
Set selection parameters	selectionParameters
Set Focus	setFocus
Set Position	setPosition
Set Quality	setQuality
Set rock	setRock
Rotate View	setRotation
Set Scale	setScale
Set Spin	setSpin
Set superpose	setSuperpose
Snapshot	snapShot
Set stage parameters	stageParameters
Update color of a selection	updateColor
Update Focus	updateFocus
Fullscreen	updateFullscreen
Update Representation	updateRepresentation
Update Rock	updateRock
Update a selection	updateSelection
Update Spin	updateSpin
Update Stage	updateStage
Update visibility	updateVisibility
Update zoomMove	updateZoomMove
Set zoomMove	zoomMove